NGS-SA: Genomic and Bioinformatic protocols to SARS-CoV-2

COVID-19 Analysis on Galaxy

Title: COVID-19 Analysis on Galaxy

Authors: Quadram Institute, SANBI, University of Melbourne, BC Centre for Disease Control

Date: 2020-07-07

Abstract

The goal is to enable and provide state-of-the-art workflows for the analysis of SARS-CoV-2 ARTIC data using the Galaxy platform. While it is possible to treat ARTIC data like regular whole-genome sequencing (WGS) data and analyze it with WGS workflows like the ones we developed for the analysis of within-samples variation, failure to take the specific nature of the data, and specifically the presence of amplicon primer sequences, into account would lead to suboptimal results


Download

A) Access Protocol at Protocols.io website (Recommended format)

B) Access Protocol in PDF format (Specific laboratory format)