Dataset

Database: GISAID

Description: Dataset include assembled whole Genomes from South Africa (i.e. > 90% coverage, < 10% NNNs)

Number of sequences: Updated regularly > 23,500

Date: 2021-11-21

Download

- Sequences in Fasta or Fastq format

- Metadata in CSV format

Please note that the data should be downloaded from Public database (i.e. GISAID or NCBI). This shared data is the work of hundreds of people and must be treated as unpublished data.
If you wish analyse the data and publish research, please contact NGS-SA to ensure that those who have generated the data can be involved in the analysis.